But maybe that's only because organisms are under pressure to evolve the most
efficient means of propulsion, and maybe it's just that cilia wouldn't be the most
efficient means of propulsion for a large organism like, say, a fish, and so no fish have evolved them.
I'm visualizing a fish propelled by cilia: I think it would work, but it would be
verrr....rrryyyy...sloooooooooow.... Mass will yield eventually to even the feeblest propulsion, it just takes a while--look at barges on the Mississippi river, they're being pushed by tugboats with relatively small engines (compared to something like an aircraft carrier). The
tugboat that went under the bridge was designed to push six barges with a total of 24 million pounds of cargo. It's all about momentum, and being patient.
And any organism that was using cilia for propulsion would have to also evolve some kind of defense system for predators, since "speedy escape" wouldn't be an option. Possibly either a shell like a turtle, or toxicity of some kind.
I don't think that any large organism that was any shape other than totally streamlined would have a hope of making cilia propulsion work.
Even water turtles are streamlined, if you think about it. At least, they're *more* streamlined than box turtles.